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Aliphatic and monocyclic saturated hydrocarbons

biomarker
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Aliphatic and monocyclic saturated hydrocarbons in the molecular fossil record and their paleobiological interpretation

BiomarkerBiological and/or environmental interpretationReferences
n-alkanes
outstanding concentrations of n15, n17 and n19 in early Paleozoic rocksGloeocapsomorpha prisca, marine phytoplankton of uncertain affinity, probably an alga, identified in Cambrian-Devonian sediments but most prominent in Ordovician. Estonian kukersite is a typical sourceBlokker et al., 2001, Fowler, 1992
n-C27 with OEP1waxes derived from higher plants, terrestrial input, post-Silurian ageHedberg, 1968, Tissot and Welte, 1984
n-C40predominantly degradation products of aliphatic macromolecules such as algaenan (marine, lacustrine), cutan and suberan (terrestrial, plant derived)Allard et al., 2002, Killops et al., 2000
Branched alkanes and acyclic isoprenoids
monomethylalkanes and dimethylalkanes (MMA and DMA)cyanobacteria both cultured and in mat communities from hypersaline and hydrothermal environmentsDembitsky et al., 2001, Kenig et al., 1995b, Koster et al., 1999, Shiea et al., 1990
5, 5-diethylalkanes with OEP1 (wrongly reported as 3, 7- or 3,w7-dimethyllkanes)these structures widely and incorrectly assigned. Chemical synthesis of a 5, 5-diethylalkane indicates this is a major series. Often occurs with other alkanes with quaternary carbon centers (BAQCs). Source organisms not known but commonly found in association with benthic microbial mats.Arouri et al., 2000a, Arouri et al., 2000b, Kenig et al., 2002, Logan et al., 1999, Logan et al., 2001, Simons et al., 2002
pristane (Pr) and phytane (Ph)from chlorophylls of cyanobacteria, algae and plants, bacteriochlorophylls a and b of phototrophic bacteria, tocopherols, Ph: archaeal membrane lipidsPeters and Moldowan, 1993
regular acyclic isoprenoids i-21 to i-30probable source is halophilic Archaea, abundant in evaporitic environmentsGrice et al., 1998b
squalane (tail-tail C30 acyclic isoprenoid)all organisms produce some squalene, most sedimentary squalane probably from Archaea.Grice et al., 1998b
crocetanearchaea (anaerobic methane oxidizers), associated with sub-sea gas, gas hydrate and mud volcanoesBian et al., 2001, Thiel et al., 1999
PMI (2,6,10,15,19-pentamethylicosane)methanogenic and methanotrophic archaeaElvert et al., 1999, Schouten et al., 1997, Thiel et al., 1999
TMI (2,6,15,19-tetramethylicosane)only reported from a mid-Cretaceous oceanic anoxic event, nonhyperthermophilic marine Crenarchaeota?Kuypers et al., 2001
C20, C25, C30 and C35 highly branched isoprenoidsunsaturated and polyunsaturated isoprenoid hydrocarbons are prominent biochemicals in some diatom taxa such as Rhizoselenia and HasleaSinninghe Damste et al., 1999a, Volkman et al., 1994, Belt et al., 2000, Rowland et al., 2001
botryococcenes and botryococcanes, cyclobotryococcenes, polymethylsqualenesthe unsaturated, sometimes cyclic, biogenic hydrocarbons and their saturated fossil counterparts are diagnostic markers of the chlorophyte B. braunii and their preferred habitat of fresh to brackish water.Huang et al., 1988, Metzger and Largeau, 1999, Summons et al., 2002
Monocyclic saturated hydrocarbons
C42 – C46 cyclopentylalkanes with OEP1oils from marine environments, unknown biological sourceCarlson et al., 1993, Hsieh and Philp, 2001
C42 – C46 cyclopentylalkanes with no distinct carbon preferenceoils from freshwater lacustrine settings, unknown biological sourcesame as above
C42 – C46 cyclopentylalkanes with strong EOP2oils from saline lacustrine settings, unknown biological sourcesame as above
cyclohexyl alkanes without predominanceformed during pyrolysis of biopolymers with long aliphatic carbon chains suggesting an origin from acyclic polymethylenic precursorsGelin et al., 1994
macrocyclic alkanes C15-C34 without preferencebitumens extracted from torbanites containing remains of B. braunii, fresh to brackish waterAudino et al., 2002

1 Odd-over-even carbon number preference

2 Even-over-odd carbon number preference

>>Biomarker classification

>>>Lipids

>>>>Acetogenic lipids

>>>>Isoprenoids

>>>>Acyclic and cyclic isoprenoids

>>>>Polycyclic isoprenoids

>>>>Hopanoids

>>>>Steroids

>>>>Carotenoids

>>>>Squalene

>>>Kerogen

>>>Diagenesis and catagenesis

>>Biomarker as Source Indicator

>>>Steranes, hopanes etc

>>>Hydrocarbons

>>>Environmental Indicators

>>>Indicators of Euxinia

>>Experimental methods to extract biomarkers

>>>Source rock

>>>Extraction

>>>Fractionation

>>>GCMS


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